RNA-seq: Setup

This workshop is designed to be run on the NeSI compute infrastructure.

Software

In order to run the workshop on your own computer you will need to ensure you installed:

• A UNIX shell such as BASH
  • install instructions
• R and RStudio
  • install instructions
• R packages
  • dplyr
  • limma
  • edgeR
  • goseq
  • beeswarm

Data (for parts 4 and 5 in R)

Download yeast count data.