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Research and Teaching IT Support
Rstudio
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Research and Teaching IT Support
Home
Getting Started
Getting Started
Quick Start
Access
Access
Access Overview
Getting an Account
Accessing the login node (ssh)
OnDemand Web portal
Data transfer
Data transfer
Data Transfer Overview
Globus
scp or rsync
Software
Software
Software Overview
onDemand
onDemand
Available Apps
OnDemand HPC Desktop
Open OnDemand
Ood file manager
Ood shell
Software environments
Software environments
SBGrid
Containers
Containers
AFNI (Analysis of Functional NeuroImages)
AlphaFold
Ansys Fluent
Bohra
CCP4
Circlator
GLOBEClaritas
ColabFold
Connectome Workbench
DeepLabCut
DeepPoseKit
Dorado
FSL
Gubbins
Guppy (GPU)
HUMAnN 3.0
MATLAB
Ollama
Openprose
Samtools
Space Ranger
TBProfiler
Whisper (speech-to-text)
xdsguI
Modules
Modules
4ti2
Macaulay2
Mathematica
Modules (LMOD)
Self managed
Self managed
Apptainer (Singularity)
Conda/Mamba
Renv (R package environments)
Shells (bash, zsh, fish, tcsh)
Spack
Venv (Python virtual environments)
Running Jobs
Running Jobs
Current utilisation
Job Efficiency
Interactive Jobs
Slurm Job Scheduling
Slurm examples
Slurm examples
Array Jobs
Dependent Jobs
Using a GPU with Slurm
Heterogeneous Jobs
Interactive Jobs
Using Python with Slurm
Using R with Slurm
Workflows
Workflows
Nextflow
Project setup
Project setup
Project setup
Bioinformatics software
Rstudio
Rstudio
Table of contents
Installing Libraries
renv
General
General
Research HPC Cluster (Aoraki)
Announcements
Announcements
April 2025 Maintenance
November 2024 Maintenance
Guidelines
Guidelines
Login Node Usage
Reasonable Useage
Storage
Changelogs
Changelogs
April 2025
November 2024
May 2024
FAQ
FAQ
How much disk storage am I using?
Exceeding quota
Storage
Storage
Storage Overview
File permissions
Data Locations
Data Locations
Hcs
Homes
Projects
Weka
Table of contents
Installing Libraries
renv
Rstudio
TODO
Installing Libraries
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renv
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