DeepLabCut¶

GUI¶

The DeepLabCut GUI can be accessed via the Open OnDemand Applications. It is highly recommended to run this on a GPU compute/CUDA partition.

Command line interface¶

DeepLabCut is made available on the cluster as a shared Apptainer container image. Scripted/commandline access requires Python to be run within the context of the container.

Open a terminal on one of the GPU nodes.
Start ipython in the container

Terminal

apptainer run --nv /opt/apptainer_img/deeplabcut-2.3.9-cuda11.8.sif ipython

Then type: import deeplabcut
See https://deeplabcut.github.io/DeepLabCut/docs/standardDeepLabCut_UserGuide.html#deeplabcut-in-the-terminal-command-line-interface

Slurm¶

DeepLabCut is made available on the cluster as a shared Apptainer container image. Scripted/commandline access requires Python to be run within the context of the container.