Bohra

Bohra is a microbial genomics pipeline.

Bohra is made available on the cluster as a shared Apptainer container image.

You can use the apptainer/bohra module which will add convenient aliases to the bohra binary, which will run within the container.

See the Bohra wiki for usage information.

Terminal

module load apptainer/bohra
# The following is required to use aliases in a non-interactive/SLURM batch script:
shopt -s expand_aliases
bohra test
bohra run ......